Is there a future for Harbaugh, Kaepernick with Niners?

By Art Spander

OAKLAND — He had the look of a man who had just swallowed a lemon. Or a huge loss. Colin Kaepernick stood at the podium with his headphones and without any meaningful answers.

The 49ers' season has gone down the drain, and it’s not unfair to suggest that Kaepernick’s career has also.

On the first play from scrimmage, Kaepernick threw an interception. On the last, in a finish that was all too symbolic, he was thrown on his backside, sacked.

In between, on this Sunday of tectonic shift, the Oakland Raiders climbed from their embarrassment of a week previous, a 52-0 loss, and stunned the Niners 24-13 at O.co Coliseum.

What a crushing, painful time it’s been for the Niners, battered on Thanksgiving night at their own venue, Levi’s Stadium, 19-3 by the Seattle Seahawks; caught in the constant tumult involving the future of head coach Jim Harbaugh; then getting embarrassed by a team that had won only once in 12 previous games.

And somewhere in the maelstrom was that tweet from team president Jed York, immediately after the defeat by Seattle, apologizing for the performance, or lack of same, against the Seahawks.

These are the conclusions one jumps to after the rapid flow of recent events: Harbaugh will not return for a fifth season as the man in charge of Niner fortunes. Kaepernick has been exposed as a quarterback who sees only his primary receiver.

Kaepernick was and is Harbaugh’s guy, chosen in the second round of the 2011 draft, a brilliant athlete who can throw a baseball more than 90 mph and in football can elude tacklers. Until, admittedly, they surround him in a well-planned pass rush.

When Alex Smith incurred a concussion midway in the ’11 season, Kaepernick took over, and with his speed and arm gained Harbaugh’s endorsement.

The following year, the two of them had the Niners in the Super Bowl, although San Francisco’s defense was the real reason, and in the game itself, the final play, Kaep demonstrated an inability to feather a pass, firing away an incompletion.

Over the last few games this season, Kaepernick and the Niner offense — one and the same — were ineffective.

Defensive coordinators in the NFL are well paid to develop designs that take advantage of every offensive weakness. It certainly appears they’ve figured out how to shut down Kaepernick.

The Raiders are in no way among the better defensive squads — on the contrary, they’re among the worst — but they sacked Kaepernick five times (including that ultimate play), picked him off once and limited him to 18 of 33 passing for 174 yards, a quarterback rating of only 54. Derek Carr, the Raiders' rookie QB, was 22 of 28 for 254 yards and a 140.2 rating.

Unsuprisingly. Kaepernick’s post-game comments offered little explanation of what was wrong and why. He has become notably reticent, almost as if being interrogated by an enemy solider rather than a few harmless journalists.

“We haven’t played well,” said Kaepernick, as if anyone holding a note pad or a microphone was under the impression they had.

Kaepernick did concede on that opening scrimmage play he was trying to find receiver Michael Crabtree, and the safety, Brandian Ross, “came over the top.” But he wouldn’t allow that the interception, so quick and jarring, had effect on the rest of the game.

“You leave that play behind,” said Kaepernick, an ironic choice of words because when Oakland’s Sebastian Janikowski kicked a field goal eight plays later the Niners were left behind, 3-0.

Although San Francisco would carve out a brief 7-3 lead, there was a sense the Raiders were in control and the Niners, about to fall to a record of 7-6, were in trouble. Once Donald Penn caught a touchdown pass from Carr on a tackle eligible play, the 49ers were out of the lead.

Harbaugh was hardly more illuminating than Kaepernick as the coach fielded questions equally divided between the game result and his own future.

When asked about Kaepernick, Harbaugh — a former quarterback himself — understandably was not going to toss his man under the bus, particularly on a day when Kaep had been tossed under the defensive line so many times.

“I look at it as a team effort,” a subdued Harbaugh said about Kaepernick’s failing, “and we didn’t get it done.”

Not at all.

Asked if York and general manager Trent Baalke want Harbaugh, under contract, to be coach of the Niners in 2015, Harbaugh responded, “My priorities are: No. 1 winning football games; No. 2, the welfare of our players, coaches and our staff; and lastly what my personal future is.”

When a journalist wanted to know if he had coached well the last month, Harbaugh said, “You have to take responsibility so it falls on me if we don’t win these games. That’s my No. 1 priority, winning football games.”

The Niners, who next face Seattle — all hope will be gone with what seems a certain defeat at the Seahawks’ place — are in a very tenuous spot. Maybe so is Harbaugh.

Asked if he wanted to be with the Niners next year, Harbaugh repeated a previous remark, “My priorities are winning games.”

Something that has become very, very difficult of late.